arrayQualityMetrics
Quality metrics report for microarray data sets
Bioconductor version: 3.24 · Package version: 3.69.1
This package generates microarray quality metrics reports for data in Bioconductor microarray data containers (ExpressionSet, NChannelSet, AffyBatch). One and two color array platforms are supported.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("arrayQualityMetrics")Details
| Maintainer | Hugo Gruson <hugo.gruson@embl.de> |
| Author | Audrey Kauffmann [aut], Wolfgang Huber [aut], Hugo Gruson [cre] |
| License | LGPL (>= 2) |
| URL | https://github.com/Huber-group-EMBL/arrayQualityMetrics |
| Bug Reports | https://github.com/Huber-group-EMBL/arrayQualityMetrics/issues |
| Downloads rank | 973 |
| Source branch | devel |
| biocViews | Microarray, OneChannel, QualityControl, ReportWriting, Software, TwoChannel |
Documentation
- Advanced topics: Customizing arrayQualityMetrics reports and programmatic processing of the output
- Introduction: microarray quality assessment with arrayQualityMetrics
Download
Follow the installation instructions to use this package in your R session.
| Source package | arrayQualityMetrics_3.69.1.tar.gz |
| Windows binary (x86_64) | arrayQualityMetrics_3.69.1.zip |
| macOS binary (arm64) | arrayQualityMetrics_3.69.1.tgz |
| macOS binary (x86_64) | arrayQualityMetrics_3.69.1.tgz |
Dependencies
Imports: affy, affyPLM (>= 1.27.3), beadarray, Biobase, genefilter, graphics, grDevices, grid, gridSVG (>= 1.4-3), Hmisc, hwriter, jsonlite, lattice, latticeExtra, limma, methods, setRNG, stats, utils, vsn (>= 3.23.3), XML, svglite
Reverse dependencies
Depends On Me (1): maEndToEnd