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arrayMvout

multivariate outlier detection for expression array QA

Bioconductor version: 3.24 · Package version: 1.71.0

This package supports the application of diverse quality metrics to AffyBatch instances, summarizing these metrics via PCA, and then performing parametric outlier detection on the PCs to identify aberrant arrays with a fixed Type I error rate

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("arrayMvout")

Details

MaintainerV. Carey <stvjc@channing.harvard.edu>
AuthorZ. Gao, A. Asare, R. Wang, V. Carey
LicenseArtistic-2.0
Downloads rank653
Source branchdevel
biocViewsInfrastructure, Microarray, QualityControl, Software

Documentation

Download

Follow the installation instructions to use this package in your R session.

Source packagearrayMvout_1.71.0.tar.gz
Windows binary (x86_64)arrayMvout_1.71.0.zip
macOS binary (arm64)arrayMvout_1.71.0.tgz
macOS binary (x86_64)arrayMvout_1.71.0.tgz
Dependencies

Depends: R (>= 2.6.0), tools, methods, utils, parody, Biobase, affy

Imports: mdqc, affyContam, lumi

Suggests: MAQCsubset, mvoutData, lumiBarnes, affyPLM, affydata, hgu133atagcdf