TCseq
Time course sequencing data analysis
Bioconductor version: 3.24 · Package version: 1.37.0
Quantitative and differential analysis of epigenomic and transcriptomic time course sequencing data, clustering analysis and visualization of the temporal patterns of time course data.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("TCseq")Details
| Maintainer | Mengjun Wu <minervajunjun@gmail.com> |
| Author | Mengjun Wu <minervajunjun@gmail.com>, Lei Gu <leigu@broadinstitute.org> |
| License | GPL (>= 2) |
| Downloads rank | 894 |
| Source branch | devel |
| biocViews | ChIPSeq, Clustering, DifferentialExpression, Epigenetics, RNASeq, Sequencing, Software, TimeCourse, Visualization |
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | TCseq_1.37.0.tar.gz |
| Windows binary (x86_64) | TCseq_1.37.0.zip |
| macOS binary (arm64) | TCseq_1.37.0.tgz |
| macOS binary (x86_64) | TCseq_1.37.0.tgz |
Dependencies
Depends: R (>= 3.4)
Imports: edgeR, BiocGenerics, reshape2, GenomicRanges, IRanges, SummarizedExperiment, GenomicAlignments, Rsamtools, e1071, cluster, ggplot2, grid, grDevices, stats, utils, methods, locfit
Suggests: testthat
Reverse dependencies
Suggests Me (1): ClusterGVis