SeqVarTools
Tools for variant data
Bioconductor version: 3.24 · Package version: 1.51.3
An interface to the fast-access storage format for VCF data provided in SeqArray, with tools for common operations and analysis.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("SeqVarTools")Details
| Maintainer | Stephanie M. Gogarten <sdmorris@uw.edu> |
| Author | Stephanie M. Gogarten, Xiuwen Zheng, Adrienne Stilp |
| License | GPL-3 |
| URL | https://github.com/smgogarten/SeqVarTools |
| Downloads rank | 1068 |
| Source branch | devel |
| biocViews | GeneticVariability, Genetics, SNP, Sequencing, Software |
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | SeqVarTools_1.51.3.tar.gz |
| Windows binary (x86_64) | SeqVarTools_1.51.2.zip |
| macOS binary (arm64) | SeqVarTools_1.51.3.tgz |
| macOS binary (x86_64) | SeqVarTools_1.51.3.tgz |
Dependencies
Depends: SeqArray
Imports: grDevices, graphics, stats, methods, Biobase, BiocGenerics, gdsfmt, GenomicRanges, IRanges, S4Vectors, GWASExactHW, logistf, Matrix, data.table