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SNAGEE

Signal-to-Noise applied to Gene Expression Experiments

Bioconductor version: 3.24 · Package version: 1.53.0

Signal-to-Noise applied to Gene Expression Experiments. Signal-to-noise ratios can be used as a proxy for quality of gene expression studies and samples. The SNRs can be calculated on any gene expression data set as long as gene IDs are available, no access to the raw data files is necessary. This allows to flag problematic studies and samples in any public data set.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("SNAGEE")

Details

MaintainerDavid Venet <davenet@ulb.ac.be>
AuthorDavid Venet <davenet@ulb.ac.be>
LicenseArtistic-2.0
URLhttp://bioconductor.org/
Downloads rank416
Source branchdevel
biocViewsMicroarray, OneChannel, QualityControl, Software, TwoChannel

Documentation

Download

Follow the installation instructions to use this package in your R session.

Source packageSNAGEE_1.53.0.tar.gz
Windows binary (x86_64)SNAGEE_1.53.0.zip
macOS binary (arm64)SNAGEE_1.53.0.tgz
macOS binary (x86_64)SNAGEE_1.53.0.tgz
Dependencies

Depends: R (>= 2.6.0), SNAGEEdata

Suggests: ALL, hgu95av2.db

Enhances: parallel

Reverse dependencies

Suggests Me (1): SNAGEEdata