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SIMAT

GC-SIM-MS data processing and alaysis tool

Bioconductor version: 3.24 · Package version: 1.45.0

This package provides a pipeline for analysis of GC-MS data acquired in selected ion monitoring (SIM) mode. The tool also provides a guidance in choosing appropriate fragments for the targets of interest by using an optimization algorithm. This is done by considering overlapping peaks from a provided library by the user.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("SIMAT")

Details

MaintainerM. R. Nezami Ranjbar <nranjbar@vt.edu>
AuthorM. R. Nezami Ranjbar <nranjbar@vt.edu>
LicenseGPL-2
URLhttp://omics.georgetown.edu/SIMAT.html
Downloads rank470
Source branchdevel
biocViewsImmunoOncology, MassSpectrometry, Metabolomics, Software

Documentation

Download

Follow the installation instructions to use this package in your R session.

Source packageSIMAT_1.45.0.tar.gz
Windows binary (x86_64)SIMAT_1.45.0.zip
macOS binary (arm64)SIMAT_1.45.0.tgz
macOS binary (x86_64)SIMAT_1.45.0.tgz
Dependencies

Depends: R (>= 3.5.0), Rcpp (>= 0.11.3)

Imports: mzR, ggplot2, grid, reshape2, grDevices, stats, utils

Suggests: RUnit, BiocGenerics