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ResidualMatrix

Creating a DelayedMatrix of Regression Residuals

Bioconductor version: 3.24 · Package version: 1.23.0

Provides delayed computation of a matrix of residuals after fitting a linear model to each column of an input matrix. Also supports partial computation of residuals where selected factors are to be preserved in the output matrix. Implements a number of efficient methods for operating on the delayed matrix of residuals, most notably matrix multiplication and calculation of row/column sums or means.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ResidualMatrix")

Details

MaintainerAaron Lun <infinite.monkeys.with.keyboards@gmail.com>
AuthorAaron Lun [aut, cre, cph]
LicenseGPL-3
URLhttps://github.com/LTLA/ResidualMatrix
Bug Reportshttps://github.com/LTLA/ResidualMatrix/issues
Downloads rank5212
Source branchdevel
biocViewsBatchEffect, DataRepresentation, ExperimentalDesign, Regression, Software

Documentation

Download

Follow the installation instructions to use this package in your R session.

Source packageResidualMatrix_1.23.0.tar.gz
Windows binary (x86_64)ResidualMatrix_1.23.0.zip
macOS binary (arm64)ResidualMatrix_1.23.0.tgz
macOS binary (x86_64)ResidualMatrix_1.23.0.tgz
Dependencies

Imports: methods, Matrix, S4Vectors, DelayedArray

Suggests: testthat, BiocStyle, knitr, rmarkdown, BiocSingular

Reverse dependencies

Imports Me (1): batchelor

Suggests Me (5): alabaster.matrix, BiocSingular, chihaya, S4Cartographer, scran