RUVSeq
Remove Unwanted Variation from RNA-Seq Data
Bioconductor version: 3.24 · Package version: 1.47.0
This package implements the remove unwanted variation (RUV) methods of Risso et al. (2014) for the normalization of RNA-Seq read counts between samples.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("RUVSeq")Details
| Maintainer | Davide Risso <risso.davide@gmail.com> |
| Author | Davide Risso [aut, cre, cph], Sandrine Dudoit [aut], Lorena Pantano [ctb], Kamil Slowikowski [ctb] |
| License | Artistic-2.0 |
| URL | https://github.com/drisso/RUVSeq |
| Bug Reports | https://github.com/drisso/RUVSeq/issues |
| Downloads rank | 1445 |
| Source branch | devel |
| biocViews | DifferentialExpression, ImmunoOncology, Preprocessing, RNASeq, Software |
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | RUVSeq_1.47.0.tar.gz |
| Windows binary (x86_64) | RUVSeq_1.47.0.zip |
| macOS binary (arm64) | RUVSeq_1.47.0.tgz |
| macOS binary (x86_64) | RUVSeq_1.47.0.tgz |
Dependencies
Depends: Biobase, EDASeq (>= 1.99.1), edgeR
Suggests: BiocStyle, knitr, RColorBrewer, zebrafishRNASeq, DESeq2
Reverse dependencies
Depends On Me (2): octad, rnaseqGene
Imports Me (3): ribosomeProfilingQC, scone, standR