PhenoGeneRanker
PhenoGeneRanker: A gene and phenotype prioritization tool
Bioconductor version: 3.24 · Package version: 1.21.0
This package is a gene/phenotype prioritization tool that utilizes multiplex heterogeneous gene phenotype network. PhenoGeneRanker allows multi-layer gene and phenotype networks. It also calculates empirical p-values of gene/phenotype ranking using random stratified sampling of genes/phenotypes based on their connectivity degree in the network. https://dl.acm.org/doi/10.1145/3307339.3342155.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("PhenoGeneRanker")Details
| Maintainer | Cagatay Dursun <cagataydursun@gmail.com> |
| Author | Cagatay Dursun [aut, cre] |
| License | Creative Commons Attribution 4.0 International License |
| Downloads rank | 237 |
| Source branch | devel |
| biocViews | BiomedicalInformatics, GenePrediction, GraphAndNetwork, Network, NetworkInference, Pathways, Software, SystemsBiology |
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | PhenoGeneRanker_1.21.0.tar.gz |
| Windows binary (x86_64) | PhenoGeneRanker_1.21.0.zip |
| macOS binary (arm64) | PhenoGeneRanker_1.21.0.tgz |
| macOS binary (x86_64) | PhenoGeneRanker_1.21.0.tgz |