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Mfuzz

Soft clustering of omics time series data

Bioconductor version: 3.24 · Package version: 2.73.0

The Mfuzz package implements noise-robust soft clustering of omics time-series data, including transcriptomic, proteomic or metabolomic data. It is based on the use of c-means clustering. For convenience, it includes a graphical user interface.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("Mfuzz")

Details

MaintainerMatthias Futschik <matthias.futschik@sysbiolab.eu>
AuthorMatthias Futschik <matthias.futschik@sysbiolab.eu>
LicenseGPL-2
URLhttp://mfuzz.sysbiolab.eu/
Downloads rank1949
Source branchdevel
biocViewsClustering, Microarray, Preprocessing, Software, TimeCourse, Visualization

Documentation

Download

Follow the installation instructions to use this package in your R session.

Source packageMfuzz_2.73.0.tar.gz
Windows binary (x86_64)Mfuzz_2.73.0.zip
macOS binary (arm64)Mfuzz_2.73.0.tgz
macOS binary (x86_64)Mfuzz_2.73.0.tgz
Dependencies

Depends: R (>= 2.5.0), Biobase (>= 2.5.5), e1071

Imports: tcltk, tkWidgets

Suggests: marray

Reverse dependencies

Depends On Me (2): cycle, MultiRNAflow

Imports Me (1): Patterns

Suggests Me (2): DAPAR, pctax