LedPred

Learning from DNA to Predict Enhancers

Bioconductor version: 3.24 · Package version: 1.47.0

This package aims at creating a predictive model of regulatory sequences used to score unknown sequences based on the content of DNA motifs, next-generation sequencing (NGS) peaks and signals and other numerical scores of the sequences using supervised classification. The package contains a workflow based on the support vector machine (SVM) algorithm that maps features to sequences, optimize SVM parameters and feature number and creates a model that can be stored and used to score the regulatory potential of unknown sequences.

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("LedPred")