HPAanalyze
Retrieve and analyze data from the Human Protein Atlas
Bioconductor version: 3.24 · Package version: 1.31.2
Provide functions for retrieving, exploratory analyzing and visualizing the Human Protein Atlas data. HPAanalyze is designed to fullfill 3 main tasks: (1) Import, subsetting and export downloadable datasets; (2) Visualization of downloadable datasets for exploratory analysis; and (3) Working with the individual XML files. This package aims to serve researchers with little programming experience, but also allow power users to use the imported data as desired.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("HPAanalyze")Details
| Maintainer | Anh Nhat Tran <trannhatanh89@gmail.com> |
| Author | Anh Nhat Tran [aut, cre] |
| License | GPL-3 + file LICENSE |
| URL | https://github.com/anhtr/HPAanalyze |
| Bug Reports | https://github.com/anhtr/HPAanalyze/issues |
| Downloads rank | 561 |
| Source branch | devel |
| biocViews | CellBiology, Proteomics, Software, Visualization |
Documentation
- Quick-start guide: Acquire and visualize the Human Protein Atlas (HPA) data in one function with HPAanalyze
- In-depth: Working with Human Protein Atlas (HPA) data in R with HPAanalyze
- Tutorial: Combine HPAanalyze with your Human Protein Atlas (HPA) queries
- Tutorial: Working with Human Protein Atlas (HPA) xml files offline
- Tutorial: Export Human Protein Atlas (HPA) data as JSON
- Tutorial: Download histology images from the Human Protein Atlas
- Tutorial: Parse an entire HPA xml file into relational tibbles with hpaXmlParse()
- Tutorial: Search the Human Protein Atlas from R with hpaSearch()
- Code for figures from HPAanalyze paper
Download
Follow the installation instructions to use this package in your R session.
| Source package | HPAanalyze_1.31.2.tar.gz |
| Windows binary (x86_64) | HPAanalyze_1.31.2.zip |
| macOS binary (arm64) | HPAanalyze_1.31.2.tgz |
| macOS binary (x86_64) | HPAanalyze_1.31.2.tgz |