GenomicTuples

Representation and Manipulation of Genomic Tuples

Bioconductor version: 3.24 · Package version: 1.47.0

GenomicTuples defines general purpose containers for storing genomic tuples. It aims to provide functionality for tuples of genomic co-ordinates that are analogous to those available for genomic ranges in the GenomicRanges Bioconductor package.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("GenomicTuples")

Details

Maintainer	Peter Hickey <peter.hickey@gmail.com>
Author	Peter Hickey [aut, cre], Marcin Cieslik [ctb], Hervé Pagès [ctb]
License	Artistic-2.0
URL	www.github.com/PeteHaitch/GenomicTuples
Bug Reports	https://github.com/PeteHaitch/GenomicTuples/issues
Downloads rank	572
Source branch	devel
biocViews	DataRepresentation, Infrastructure, Sequencing, Software

Documentation

GenomicTuples: Classes and Methods

Download

Follow the installation instructions to use this package in your R session.

Source package	GenomicTuples_1.47.0.tar.gz
Windows binary (x86_64)	GenomicTuples_1.47.0.zip
macOS binary (arm64)	GenomicTuples_1.47.0.tgz
macOS binary (x86_64)	GenomicTuples_1.47.0.tgz

Dependencies

Depends: R (>= 4.0), GenomicRanges (>= 1.37.4), Seqinfo, S4Vectors (>= 0.17.25)

Imports: methods, BiocGenerics (>= 0.21.2), Rcpp (>= 0.11.2), IRanges (>= 2.19.13), data.table, stats4, stats, utils

LinkingTo: Rcpp

Suggests: testthat, knitr, BiocStyle, rmarkdown, covr, GenomicAlignments, Biostrings, GenomeInfoDb