GeneGA
Design gene based on both mRNA secondary structure and codon usage bias using Genetic algorithm
Bioconductor version: 3.24 · Package version: 1.63.1
R based Genetic algorithm for gene expression optimization by considering both mRNA secondary structure and codon usage bias, GeneGA includes the information of highly expressed genes of almost 200 genomes. Meanwhile, Vienna RNA Package is needed to ensure GeneGA to function properly.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("GeneGA")Details
| Maintainer | Zhenpeng Li <zpli21@gmail.com> |
| Author | Zhenpeng Li and Haixiu Huang |
| License | GPL version 2 |
| URL | http://www.tbi.univie.ac.at/~ivo/RNA/ |
| Downloads rank | 279 |
| Source branch | devel |
| biocViews | GeneExpression, Software |
Download
Follow the installation instructions to use this package in your R session.
| Source package | GeneGA_1.63.1.tar.gz |
| macOS binary (x86_64) | GeneGA_1.63.1.tgz |