GenVisR
Genomic Visualizations in R
Bioconductor version: 3.24 · Package version: 1.45.0
Produce highly customizable publication quality graphics for genomic data primarily at the cohort level.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("GenVisR")Details
| Maintainer | Zachary Skidmore <zlskidmore@gmail.com> |
| Author | Zachary Skidmore [aut, cre], Alex Wagner [aut], Robert Lesurf [aut], Katie Campbell [aut], Jason Kunisaki [aut], Obi Griffith [aut], Malachi Griffith [aut] |
| License | GPL-3 + file LICENSE |
| Bug Reports | https://github.com/griffithlab/GenVisR/issues |
| Downloads rank | 789 |
| Source branch | devel |
| biocViews | Classification, DNASeq, DataRepresentation, Infrastructure, Software |
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | GenVisR_1.45.0.tar.gz |
| Windows binary (x86_64) | GenVisR_1.45.0.zip |
| macOS binary (arm64) | GenVisR_1.45.0.tgz |
| macOS binary (x86_64) | GenVisR_1.45.0.tgz |
Dependencies
Depends: R (>= 3.3.0), methods
Imports: AnnotationDbi, biomaRt (>= 2.45.8), BiocGenerics, Biostrings, DBI, GenomicFeatures, GenomicRanges (>= 1.25.4), ggplot2 (>= 2.1.0), gridExtra (>= 2.0.0), gtable, gtools, IRanges (>= 2.7.5), plyr (>= 1.8.3), reshape2, Rsamtools, scales, viridis, data.table, BSgenome, Seqinfo, VariantAnnotation
Suggests: BiocStyle, BSgenome.Hsapiens.UCSC.hg19, knitr, RMySQL, roxygen2, testthat, TxDb.Hsapiens.UCSC.hg19.knownGene, rmarkdown, vdiffr, formatR, TxDb.Hsapiens.UCSC.hg38.knownGene, BSgenome.Hsapiens.UCSC.hg38