GateFinder
Projection-based Gating Strategy Optimization for Flow and Mass Cytometry
Bioconductor version: 3.24 · Package version: 1.33.0
Given a vector of cluster memberships for a cell population, identifies a sequence of gates (polygon filters on 2D scatter plots) for isolation of that cell type.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("GateFinder")Details
| Maintainer | Nima Aghaeepour <naghaeep@gmail.com> |
| Author | Nima Aghaeepour <naghaeep@gmail.com>, Erin F. Simonds <erin.simonds@gmail.com> |
| License | Artistic-2.0 |
| Downloads rank | 409 |
| Source branch | devel |
| biocViews | CellBiology, Clustering, FlowCytometry, ImmunoOncology, Software |
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | GateFinder_1.33.0.tar.gz |
| Windows binary (x86_64) | GateFinder_1.33.0.zip |
| macOS binary (arm64) | GateFinder_1.33.0.tgz |
| macOS binary (x86_64) | GateFinder_1.33.0.tgz |