GENIE3
GEne Network Inference with Ensemble of trees
Bioconductor version: 3.24 · Package version: 1.35.0
This package implements the GENIE3 algorithm for inferring gene regulatory networks from expression data.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("GENIE3")Details
| Maintainer | Van Anh Huynh-Thu <vahuynh@uliege.be> |
| Author | Van Anh Huynh-Thu, Sara Aibar, Pierre Geurts |
| License | GPL (>= 2) |
| Downloads rank | 2000 |
| Source branch | devel |
| biocViews | DecisionTree, GeneExpression, GraphAndNetwork, Network, NetworkInference, Regression, Software, SystemsBiology |
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | GENIE3_1.35.0.tar.gz |
| Windows binary (x86_64) | GENIE3_1.35.0.zip |
| macOS binary (arm64) | GENIE3_1.35.0.tgz |
| macOS binary (x86_64) | GENIE3_1.35.0.tgz |
Dependencies
Imports: stats, reshape2, dplyr
Suggests: knitr, rmarkdown, foreach, doRNG, doParallel, Biobase, SummarizedExperiment, testthat, methods, BiocStyle
Reverse dependencies
Imports Me (3): BioNERO, MetNet, scGraphVerse