FELLA
Interpretation and enrichment for metabolomics data
Bioconductor version: 3.24 · Package version: 1.33.0
Enrichment of metabolomics data using KEGG entries. Given a set of affected compounds, FELLA suggests affected reactions, enzymes, modules and pathways using label propagation in a knowledge model network. The resulting subnetwork can be visualised and exported.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("FELLA")Details
| Maintainer | Sergio Picart-Armada <sergi.picart@upc.edu> |
| Author | Sergio Picart-Armada [aut, cre], Francesc Fernandez-Albert [aut], Alexandre Perera-Lluna [aut] |
| License | GPL-3 |
| Downloads rank | 633 |
| Source branch | devel |
| biocViews | GO, GraphAndNetwork, KEGG, Metabolomics, Network, NetworkEnrichment, Pathways, Software |
Documentation
- A fatty liver study on Mus musculus
- An oxybenzone exposition study on gilt-head bream
- FELLA
- An overview of FELLA: data enrichment for metabolomics summary data
Download
Follow the installation instructions to use this package in your R session.
| Source package | FELLA_1.33.0.tar.gz |
| Windows binary (x86_64) | FELLA_1.33.0.zip |
| macOS binary (arm64) | FELLA_1.33.0.tgz |
| macOS binary (x86_64) | FELLA_1.33.0.tgz |
Dependencies
Depends: R (>= 3.5.0)
Imports: methods, igraph, Matrix, KEGGREST, plyr, stats, graphics, utils
Suggests: shiny, DT, magrittr, visNetwork, knitr, BiocStyle, rmarkdown, testthat, biomaRt, org.Hs.eg.db, org.Mm.eg.db, AnnotationDbi, GOSemSim