EGAD

Extending guilt by association by degree

Bioconductor version: 3.24 · Package version: 1.41.0

The package implements a series of highly efficient tools to calculate functional properties of networks based on guilt by association methods.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("EGAD")

Maintainer	Sara Ballouz <sarahballouz@gmail.com>
Author	Sara Ballouz [aut, cre], Melanie Weber [aut, ctb], Paul Pavlidis [aut], Jesse Gillis [aut, ctb]
License	GPL-2
Downloads rank	489
Source branch	devel
biocViews	FunctionalGenomics, FunctionalPrediction, GenePrediction, GraphAndNetwork, Network, NetworkEnrichment, Software, SystemsBiology

Follow the installation instructions to use this package in your R session.

Dependencies

Depends: R (>= 3.5)

Imports: gplots, Biobase, GEOquery, limma, impute, RColorBrewer, zoo, igraph, plyr, MASS, RCurl, methods

Suggests: knitr, testthat, rmarkdown, markdown