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DNAcycP2

DNA Cyclizability Prediction

Bioconductor version: 3.24 · Package version: 1.5.1

This package performs prediction of intrinsic cyclizability of of every 50-bp subsequence in a DNA sequence. The input could be a file either in FASTA or text format. The output will be the C-score, the estimated intrinsic cyclizability score for each 50 bp sequences in each entry of the sequence set.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("DNAcycP2")

Details

MaintainerJi-Ping Wang <jzwang@northwestern.edu>
AuthorBrody Kendall [aut], Keren Li [aut], Ji-Ping Wang [aut, cre] (ORCID: <https://orcid.org/0000-0002-8398-939X>)
LicenseArtistic-2.0
URLhttps://github.com/jipingw/DNAcycP2
Bug Reportshttps://github.com/jipingw/DNAcycP2
Downloads rank292
Source branchdevel
biocViewsNeuralNetwork, Software, StructuralPrediction

Documentation

Download

Follow the installation instructions to use this package in your R session.

Source packageDNAcycP2_1.5.1.tar.gz
Windows binary (x86_64)DNAcycP2_1.5.1.zip
macOS binary (arm64)DNAcycP2_1.5.1.tgz
macOS binary (x86_64)DNAcycP2_1.5.1.tgz
Dependencies

Depends: R (>= 4.4.0)

Imports: basilisk, reticulate

Suggests: knitr, rmarkdown, BiocGenerics, RUnit, tinytest, BiocStyle, Biostrings