CoverageView
Coverage visualization package for R
Bioconductor version: 3.24 · Package version: 1.51.1
This package provides a framework for the visualization of genome coverage profiles. It can be used for ChIP-seq experiments, but it can be also used for genome-wide nucleosome positioning experiments or other experiment types where it is important to have a framework in order to inspect how the coverage distributed across the genome
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("CoverageView") Details
| Maintainer | Ernesto Lowy <ernestolowy@gmail.com> |
| Author | Ernesto Lowy |
| License | Artistic-2.0 |
| Downloads rank | 547 |
| Source branch | devel |
| biocViews | ChIPSeq, ImmunoOncology, RNASeq, Sequencing, Software, Technology, Visualization |
Download
Follow the installation instructions to use this package in your R session.
| Source package | CoverageView_1.51.1.tar.gz |
| macOS binary (arm64) | CoverageView_1.51.1.tgz |
| macOS binary (x86_64) | CoverageView_1.51.1.tgz |
Dependencies
Depends: R (>= 2.10), methods, Rsamtools (>= 1.19.17), rtracklayer
Imports: S4Vectors (>= 0.7.21), IRanges (>= 2.3.23), GenomicRanges, GenomicAlignments, parallel, tools