ChromHeatMap
Heat map plotting by genome coordinate
Bioconductor version: 3.24 · Package version: 1.67.0
The ChromHeatMap package can be used to plot genome-wide data (e.g. expression, CGH, SNP) along each strand of a given chromosome as a heat map. The generated heat map can be used to interactively identify probes and genes of interest.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("ChromHeatMap")Details
| Maintainer | Tim F. Rayner <tfrayner@gmail.com> |
| Author | Tim F. Rayner |
| License | Artistic-2.0 |
| Downloads rank | 601 |
| Source branch | devel |
| biocViews | Software, Visualization |
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | ChromHeatMap_1.67.0.tar.gz |
| Windows binary (x86_64) | ChromHeatMap_1.67.0.zip |
| macOS binary (arm64) | ChromHeatMap_1.67.0.tgz |
| macOS binary (x86_64) | ChromHeatMap_1.67.0.tgz |
Dependencies
Depends: R (>= 2.9.0), BiocGenerics (>= 0.3.2), annotate (>= 1.20.0), AnnotationDbi (>= 1.4.0)
Imports: Biobase (>= 2.17.8), graphics, grDevices, methods, stats, IRanges, rtracklayer, GenomicRanges
Suggests: ALL, hgu95av2.db