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Category

Category Analysis

Bioconductor version: 3.24 · Package version: 2.79.0

A collection of tools for performing category (gene set enrichment) analysis.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("Category")

Details

MaintainerBioconductor Package Maintainer <maintainer@bioconductor.org>
AuthorRobert Gentleman [aut], Seth Falcon [ctb], Deepayan Sarkar [ctb], Robert Castelo [ctb], Bioconductor Package Maintainer [cre]
LicenseArtistic-2.0
Downloads rank2020
Source branchdevel
biocViewsAnnotation, GO, GeneSetEnrichment, Pathways, Software

Documentation

Download

Follow the installation instructions to use this package in your R session.

Source packageCategory_2.79.0.tar.gz
Windows binary (x86_64)Category_2.79.0.zip
macOS binary (arm64)Category_2.79.0.tgz
macOS binary (x86_64)Category_2.79.0.tgz
Dependencies

Depends: methods, stats4, BiocGenerics, AnnotationDbi, Biobase, Matrix

Imports: utils, stats, graph, RBGL, GSEABase, genefilter, annotate, DBI

Suggests: EBarrays, ALL, Rgraphviz, RColorBrewer, xtable (>= 1.4-6), hgu95av2.db, KEGGREST, karyoploteR, geneplotter, limma, lattice, RUnit, org.Sc.sgd.db, GOstats, GO.db

Reverse dependencies

Depends On Me (1): GOstats

Imports Me (7): categoryCompare, GmicR, meshr, miRLAB, phenoTest, ReportingTools, scTensor

Suggests Me (4): GSEAlm, maGUI, qpgraph, RnBeads