BiSeq
Processing and analyzing bisulfite sequencing data
Bioconductor version: 3.24 · Package version: 1.53.0
The BiSeq package provides useful classes and functions to handle and analyze targeted bisulfite sequencing (BS) data such as reduced-representation bisulfite sequencing (RRBS) data. In particular, it implements an algorithm to detect differentially methylated regions (DMRs). The package takes already aligned BS data from one or multiple samples.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("BiSeq")Details
| Maintainer | Katja Hebestreit <katja.hebestreit@gmail.com> |
| Author | Katja Hebestreit, Hans-Ulrich Klein |
| License | LGPL-3 |
| Downloads rank | 694 |
| Source branch | devel |
| biocViews | DNAMethylation, Genetics, MethylSeq, Sequencing, Software |
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | BiSeq_1.53.0.tar.gz |
| Windows binary (x86_64) | BiSeq_1.53.0.zip |
| macOS binary (arm64) | BiSeq_1.53.0.tgz |
| macOS binary (x86_64) | BiSeq_1.53.0.tgz |
Dependencies
Depends: R (>= 3.5.0), methods, S4Vectors, IRanges (>= 1.17.24), GenomicRanges, SummarizedExperiment (>= 0.2.0), Formula
Imports: methods, BiocGenerics, Biobase, S4Vectors, IRanges, Seqinfo, GenomicRanges, SummarizedExperiment, rtracklayer, parallel, betareg, lokern, Formula, globaltest