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BCRANK

Predicting binding site consensus from ranked DNA sequences

Bioconductor version: 3.24 · Package version: 1.75.0

Functions and classes for de novo prediction of transcription factor binding consensus by heuristic search

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("BCRANK")

Details

MaintainerAdam Ameur <Adam.Ameur@genpat.uu.se>
AuthorAdam Ameur <Adam.Ameur@genpat.uu.se>
LicenseGPL-2
Downloads rank734
Source branchdevel
biocViewsGeneRegulation, MotifDiscovery, Software

Documentation

Download

Follow the installation instructions to use this package in your R session.

Source packageBCRANK_1.75.0.tar.gz
Windows binary (x86_64)BCRANK_1.75.0.zip
macOS binary (arm64)BCRANK_1.75.0.tgz
macOS binary (x86_64)BCRANK_1.75.0.tgz
Dependencies

Depends: methods

Imports: Biostrings

Suggests: seqLogo