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Anaquin

Statistical analysis of sequins

Bioconductor version: 3.24 · Package version: 2.37.0

The project is intended to support the use of sequins (synthetic sequencing spike-in controls) owned and made available by the Garvan Institute of Medical Research. The goal is to provide a standard open source library for quantitative analysis, modelling and visualization of spike-in controls.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("Anaquin")

Details

MaintainerTed Wong <t.wong@garvan.org.au>
AuthorTed Wong
LicenseBSD_3_clause + file LICENSE
URLwww.sequin.xyz
Bug Reportshttps://github.com/student-t/RAnaquin/issues
Downloads rank444
Source branchdevel
biocViewsDifferentialExpression, GeneExpression, ImmunoOncology, Preprocessing, RNASeq, Software

Documentation

Download

Follow the installation instructions to use this package in your R session.

Source packageAnaquin_2.37.0.tar.gz
Windows binary (x86_64)Anaquin_2.37.0.zip
macOS binary (arm64)Anaquin_2.37.0.tgz
macOS binary (x86_64)Anaquin_2.37.0.tgz
Dependencies

Depends: R (>= 3.3), ggplot2 (>= 2.2.0)

Imports: ggplot2, ROCR, knitr, qvalue, locfit, methods, stats, utils, plyr, DESeq2

Suggests: RUnit, rmarkdown