ASpli
Analysis of Alternative Splicing Using RNA-Seq
Bioconductor version: 3.24 · Package version: 2.23.0
Integrative pipeline for the analysis of alternative splicing using RNAseq.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("ASpli")Details
| Maintainer | Ariel Chernomoretz <algo107@gmail.com> |
| Author | Estefania Mancini, Andres Rabinovich, Javier Iserte, Marcelo Yanovsky and Ariel Chernomoretz |
| License | GPL |
| Downloads rank | 730 |
| Source branch | devel |
| biocViews | Alignment, AlternativeSplicing, Coverage, DifferentialExpression, DifferentialSplicing, GeneExpression, GenomeAnnotation, ImmunoOncology, RNASeq, Sequencing, Software, TimeCourse, Transcription |
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | ASpli_2.23.0.tar.gz |
| Windows binary (x86_64) | ASpli_2.23.0.zip |
| macOS binary (arm64) | ASpli_2.23.0.tgz |
| macOS binary (x86_64) | ASpli_2.23.0.tgz |
Dependencies
Depends: methods, grDevices, stats, utils, parallel, edgeR, limma, AnnotationDbi
Imports: GenomicRanges, GenomicFeatures, BiocGenerics, IRanges, GenomicAlignments, Gviz, S4Vectors, Rsamtools, BiocStyle, igraph, htmltools, data.table, UpSetR, tidyr, DT, MASS, grid, graphics, pbmcapply, txdbmaker
Reverse dependencies
Imports Me (1): saseR