ASAFE
Ancestry Specific Allele Frequency Estimation
Bioconductor version: 3.24 · Package version: 1.39.0
Given admixed individuals' bi-allelic SNP genotypes and ancestry pairs (where each ancestry can take one of three values) for multiple SNPs, perform an EM algorithm to deal with the fact that SNP genotypes are unphased with respect to ancestry pairs, in order to estimate ancestry-specific allele frequencies for all SNPs.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("ASAFE")Details
| Maintainer | Qian Zhang <qszhang@uw.edu> |
| Author | Qian Zhang <qszhang@uw.edu> |
| License | Artistic-2.0 |
| Downloads rank | 332 |
| Source branch | devel |
| biocViews | BiomedicalInformatics, ExperimentalDesign, Genetics, GenomeWideAssociation, LinkageDisequilibrium, SNP, Software |
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | ASAFE_1.39.0.tar.gz |
| Windows binary (x86_64) | ASAFE_1.39.0.zip |
| macOS binary (arm64) | ASAFE_1.39.0.tgz |
| macOS binary (x86_64) | ASAFE_1.39.0.tgz |