prebsdata

DOI: 10.18129/B9.bioc.prebsdata    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see prebsdata.

Data for 'prebs' package

Bioconductor version: 3.9

This package contains data required to run examples in 'prebs' package. The data files include: 1) Small sample bam files for demonstration purposes 2) Probe sequence mappings for Custom CDF (taken from http://brainarray.mbni.med.umich.edu/brainarray/Database/CustomCDF/genomic_curated_CDF.asp) 3) Probe sequence mappings for manufacturer's CDF (manually created using bowtie)

Author: Karolis Uziela and Antti Honkela

Maintainer: Karolis Uziela <karolis.uziela at scilifelab.se>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("prebsdata")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("prebsdata")

 

PDF		prebsdata User Guide
PDF		Reference Manual

Details

biocViews	ExperimentData, RNASeqData, SequencingData
Version	1.20.0
License	Artistic-2.0
Depends	R (>= 2.14.0)
Imports
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me	prebs, SigFuge
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	prebsdata_1.20.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository	git clone https://git.bioconductor.org/packages/prebsdata
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/prebsdata
Package Short Url	https://bioconductor.org/packages/prebsdata/
Package Downloads Report	Download Stats