curatedAdipoChIP

DOI: 10.18129/B9.bioc.curatedAdipoChIP    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see curatedAdipoChIP.

A Curated ChIP-Seq Dataset of MDI-induced Differentiated Adipocytes (3T3-L1)

Bioconductor version: 3.9

A curated dataset of publicly available ChIP-sequencing of transcription factors, chromatin remodelers and histone modifications in the 3T3-L1 pre-adipocyte cell line. The package document the data collection, pre-processing and processing of the data. In addition to the documentation, the package contains the scripts that was used to generated the data.

Author: Mahmoud Ahmed [aut, cre]

Maintainer: Mahmoud Ahmed <mahmoud.s.fahmy at students.kasralainy.edu.eg>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("curatedAdipoChIP")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("curatedAdipoChIP")

 

HTML	R Script	Using curatedAdipoChIP
PDF		Reference Manual
Text		NEWS

Details

biocViews	ChIPSeqData, ExperimentData, ExperimentHub, GEO, SequencingData
Version	1.0.0
License	GPL-3
Depends	R (>= 3.6), SummarizedExperiment, ExperimentHub
Imports
LinkingTo
Suggests	knitr, rmarkdown, GenomicFeatures, ChIPseeker, AnnotationDbi, S4Vectors, DESeq2, fastqcr, devtools, testthat, readr, dplyr, tidyr, ggplot2
SystemRequirements
Enhances
URL	https://github.com/MahShaaban/curatedAdipoChIP
BugReports	https://github.com/MahShaaban/curatedAdipoChIP/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	curatedAdipoChIP_1.0.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository	git clone https://git.bioconductor.org/packages/curatedAdipoChIP
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/curatedAdipoChIP
Package Short Url	https://bioconductor.org/packages/curatedAdipoChIP/
Package Downloads Report	Download Stats