aracne.networks

DOI: 10.18129/B9.bioc.aracne.networks    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see aracne.networks.

ARACNe-inferred gene networks from TCGA tumor datasets

Bioconductor version: 3.9

This package contains ARACNe-inferred networks from TCGA tumor datasets. It also contains a function to export them into plain-text format.

Author: Federico M. Giorgi

Maintainer: Federico M. Giorgi <federico.giorgi at gmail.com>, Mariano Alvarez <reef103 at gmail.com>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("aracne.networks")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("aracne.networks")

 

PDF	R Script	Using aracne.networks
PDF		Reference Manual
Text		NEWS
Text		LICENSE

Details

biocViews	CancerData, ExperimentData, Genome, Homo_sapiens_Data
Version	1.10.0
License	file LICENSE
Depends	R (>= 3.3), viper
Imports
LinkingTo
Suggests
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Enhances
URL
Depends On Me
Imports Me
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Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	aracne.networks_1.10.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository	git clone https://git.bioconductor.org/packages/aracne.networks
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/aracne.networks
Package Short Url	https://bioconductor.org/packages/aracne.networks/
Package Downloads Report	Download Stats