HelloRangesData

DOI: 10.18129/B9.bioc.HelloRangesData    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see HelloRangesData.

Data for the HelloRanges tutorial vignette

Bioconductor version: 3.9

Provides the data that were used in the bedtools tutorial by Aaron Quinlan (http://quinlanlab.org/tutorials/bedtools/bedtools.html). Includes a subset of the DnaseI hypersensitivity data from "Maurano et al. Systematic Localization of Common Disease-Associated Variation in Regulatory DNA. Science. 2012. Vol. 337 no. 6099 pp. 1190-1195." The rest of the tracks were originally downloaded from the UCSC table browser. See the HelloRanges vignette for a port of the bedtools tutorial to R.

Author: Michael Lawrence

Maintainer: Michael Lawrence <michafla at gene.com>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("HelloRangesData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("HelloRangesData")

 

PDF	R Script	HelloRanges Example Data
PDF		Reference Manual

Details

biocViews	ExperimentData, SequencingData
Version	1.10.0
License	GPL (>= 2)
Depends
Imports
LinkingTo
Suggests	BiocStyle
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me	HelloRanges, plyranges
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	HelloRangesData_1.10.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository	git clone https://git.bioconductor.org/packages/HelloRangesData
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/HelloRangesData
Package Short Url	https://bioconductor.org/packages/HelloRangesData/
Package Downloads Report	Download Stats