ConnectivityMap

DOI: 10.18129/B9.bioc.ConnectivityMap    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see ConnectivityMap.

Functional connections between drugs, genes and diseases as revealed by common gene-expression changes

Bioconductor version: 3.9

The Broad Institute's Connectivity Map (cmap02) is a "large reference catalogue of gene-expression data from cultured human cells perturbed with many chemicals and genetic reagents", containing more than 7000 gene expression profiles and 1300 small molecules.

Author: Paul Shannon

Maintainer: Paul Shannon<pshannon at systemsbiology.org>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ConnectivityMap")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF		Reference Manual

Details

biocViews	CancerData, ExperimentData, MicroarrayData
Version	1.20.0
License	GPL-3
Depends	R (>= 2.15.1)
Imports
LinkingTo
Suggests	RUnit, BiocGenerics
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	ConnectivityMap_1.20.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository	git clone https://git.bioconductor.org/packages/ConnectivityMap
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/ConnectivityMap
Package Short Url	https://bioconductor.org/packages/ConnectivityMap/
Package Downloads Report	Download Stats