qsmooth

DOI: 10.18129/B9.bioc.qsmooth    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see qsmooth.

Smooth quantile normalization

Bioconductor version: 3.9

Smooth quantile normalization is a generalization of quantile normalization, which is average of the two types of assumptions about the data generation process: quantile normalization and quantile normalization between groups.

Author: Stephanie C. Hicks [aut, cre] , Kwame Okrah [aut], Hector Corrada Bravo [aut] , Rafael Irizarry [aut]

Maintainer: Stephanie C. Hicks <shicks19 at jhu.edu>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("qsmooth")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("qsmooth")

 

HTML	R Script	The qsmooth user's guide
PDF		Reference Manual
Text		NEWS

Details

biocViews	BatchEffect, Microarray, MultipleComparison, Normalization, Preprocessing, RNASeq, Sequencing, Software
Version	1.0.0
In Bioconductor since	BioC 3.9 (R-3.6) (< 6 months)
License	CC BY 4.0
Depends	R (>= 3.6.0)
Imports	SummarizedExperiment, utils, sva, stats, methods, graphics
LinkingTo
Suggests	bodymapRat, quantro, knitr, rmarkdown, BiocStyle, testthat
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	qsmooth_1.0.0.tar.gz
Windows Binary	qsmooth_1.0.0.zip
Mac OS X 10.11 (El Capitan)	qsmooth_1.0.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/qsmooth
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/qsmooth
Package Short Url	https://bioconductor.org/packages/qsmooth/
Package Downloads Report	Download Stats