pathRender

DOI: 10.18129/B9.bioc.pathRender    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see pathRender.

Render molecular pathways

Bioconductor version: 3.9

build graphs from pathway databases, render them by Rgraphviz.

Author: Li Long <lilong at isb-sib.ch>

Maintainer: Vince Carey <stvjc at channing.harvard.edu>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("pathRender")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("pathRender")

 

PDF	R Script	pathRender overview
PDF	R Script	pathway graphs colored by expression map
PDF		Reference Manual
Text		NEWS

Details

biocViews	GraphAndNetwork, Pathways, Software, Visualization
Version	1.52.0
In Bioconductor since	BioC 1.8 (R-2.3) (13.5 years)
License	LGPL
Depends	graph, Rgraphviz, RColorBrewer, cMAP, AnnotationDbi, methods, stats4
Imports
LinkingTo
Suggests	ALL, hgu95av2.db
SystemRequirements
Enhances
URL	http://www.bioconductor.org
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	pathRender_1.52.0.tar.gz
Windows Binary	pathRender_1.52.0.zip
Mac OS X 10.11 (El Capitan)	pathRender_1.52.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/pathRender
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/pathRender
Package Short Url	https://bioconductor.org/packages/pathRender/
Package Downloads Report	Download Stats