metabomxtr

DOI: 10.18129/B9.bioc.metabomxtr    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see metabomxtr.

A package to run mixture models for truncated metabolomics data with normal or lognormal distributions

Bioconductor version: 3.9

The functions in this package return optimized parameter estimates and log likelihoods for mixture models of truncated data with normal or lognormal distributions.

Author: Michael Nodzenski, Anna Reisetter, Denise Scholtens

Maintainer: Michael Nodzenski <michael.nodzenski at northwestern.edu>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("metabomxtr")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("metabomxtr")

 

PDF	R Script	metabomxtr
PDF	R Script	mixnorm
PDF		Reference Manual
Text		NEWS

Details

biocViews	ImmunoOncology, MassSpectrometry, Metabolomics, Software
Version	1.18.0
In Bioconductor since	BioC 3.0 (R-3.1) (5 years)
License	GPL-2
Depends	methods, Biobase
Imports	optimx, Formula, plyr, multtest, BiocParallel, ggplot2
LinkingTo
Suggests	xtable, reshape2
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	metabomxtr_1.18.0.tar.gz
Windows Binary	metabomxtr_1.18.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan)	metabomxtr_1.18.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/metabomxtr
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/metabomxtr
Package Short Url	https://bioconductor.org/packages/metabomxtr/
Package Downloads Report	Download Stats