imageHTS

DOI: 10.18129/B9.bioc.imageHTS    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see imageHTS.

Analysis of high-throughput microscopy-based screens

Bioconductor version: 3.9

imageHTS is an R package dedicated to the analysis of high-throughput microscopy-based screens. The package provides a modular and extensible framework to segment cells, extract quantitative cell features, predict cell types and browse screen data through web interfaces. Designed to operate in distributed environments, imageHTS provides a standardized access to remote data and facilitates the dissemination of high-throughput microscopy-based datasets.

Author: Gregoire Pau, Xian Zhang, Michael Boutros, Wolfgang Huber

Maintainer: Joseph Barry <joseph.barry at embl.de>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("imageHTS")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("imageHTS")

 

PDF	R Script	Analysis of high-throughput microscopy-based screens with imageHTS
PDF		Reference Manual
Text		NEWS

Details

biocViews	CellBasedAssays, ImmunoOncology, Preprocessing, Software, Visualization
Version	1.34.0
In Bioconductor since	BioC 2.7 (R-2.12) (9 years)
License	LGPL-2.1
Depends	R (>= 2.9.0), EBImage(>= 4.3.12), cellHTS2(>= 2.10.0)
Imports	tools, Biobase, hwriter, methods, vsn, stats, utils, e1071
LinkingTo
Suggests	BiocStyle, MASS
SystemRequirements
Enhances
URL
Depends On Me	PGPC
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	imageHTS_1.34.0.tar.gz
Windows Binary	imageHTS_1.34.0.zip
Mac OS X 10.11 (El Capitan)	imageHTS_1.34.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/imageHTS
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/imageHTS
Package Short Url	https://bioconductor.org/packages/imageHTS/
Package Downloads Report	Download Stats