gpuMagic

DOI: 10.18129/B9.bioc.gpuMagic    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see gpuMagic.

An openCL compiler with the capacity to compile R functions and run the code on GPU

Bioconductor version: 3.9

The package aims to help users write openCL code with little or no effort. It is able to compile an user-defined R function and run it on a device such as a CPU or a GPU. The user can also write and run their openCL code directly by calling .kernel function.

Author: Jiefei Wang

Maintainer: Jiefei Wang <szwjf08 at gmail.com>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("gpuMagic")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF		Reference Manual

Details

biocViews	Infrastructure, Software
Version	1.0.0
In Bioconductor since	BioC 3.9 (R-3.6) (< 6 months)
License	GPL-3
Depends	R (>= 3.6.0), methods, utils
Imports	Deriv, DescTools, digest, pryr, stringr, BiocGenerics
LinkingTo	Rcpp
Suggests	testthat, knitr, rmarkdown, BiocStyle
SystemRequirements	C++11, a graphic driver or a CPU SDK. For windows user, an ICD loader is required at C:/windows/system32/OpenCL.dll (Usually it is installed by the graphic driver). For linux user (Except mac): ocl-icd-opencl-dev package is required.
Enhances
URL
BugReports	https://github.com/Jiefei-Wang/gpuMagic/issues
Depends On Me
Imports Me
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Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary
Mac OS X 10.11 (El Capitan)	gpuMagic_1.0.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/gpuMagic
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/gpuMagic
Package Short Url	https://bioconductor.org/packages/gpuMagic/
Package Downloads Report	Download Stats