globalSeq

DOI: 10.18129/B9.bioc.globalSeq    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see globalSeq.

Global Test for Counts

Bioconductor version: 3.9

The method may be conceptualised as a test of overall significance in regression analysis, where the response variable is overdispersed and the number of explanatory variables exceeds the sample size. Useful for testing for association between RNA-Seq and high-dimensional data.

Author: Armin Rauschenberger [aut, cre]

Maintainer: Armin Rauschenberger <a.rauschenberger at vumc.nl>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("globalSeq")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("globalSeq")

 

HTML		article frame
HTML		vignette frame
PDF	R Script	vignette source
PDF		Reference Manual
Text		NEWS

Details

biocViews	DifferentialExpression, DimensionReduction, ExomeSeq, ExonArray, GeneExpression, GenomeWideAssociation, MultipleComparison, RNASeq, Regression, Sequencing, Software, Transcriptomics, WholeGenome, miRNA
Version	1.12.0
In Bioconductor since	BioC 3.3 (R-3.3) (3.5 years)
License	GPL-3
Depends	R (>= 3.5.0)
Imports
LinkingTo
Suggests	knitr, testthat, SummarizedExperiment, S4Vectors
SystemRequirements
Enhances
URL	https://github.com/rauschenberger/globalSeq
BugReports	https://github.com/rauschenberger/globalSeq/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	globalSeq_1.12.0.tar.gz
Windows Binary	globalSeq_1.12.0.zip
Mac OS X 10.11 (El Capitan)	globalSeq_1.12.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/globalSeq
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/globalSeq
Package Short Url	https://bioconductor.org/packages/globalSeq/
Package Downloads Report	Download Stats