fastLiquidAssociation

DOI: 10.18129/B9.bioc.fastLiquidAssociation    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see fastLiquidAssociation.

functions for genome-wide application of Liquid Association

Bioconductor version: 3.9

This package extends the function of the LiquidAssociation package for genome-wide application. It integrates a screening method into the LA analysis to reduce the number of triplets to be examined for a high LA value and provides code for use in subsequent significance analyses.

Author: Tina Gunderson

Maintainer: Tina Gunderson <gunderson.tina at gmail.com>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("fastLiquidAssociation")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("fastLiquidAssociation")

 

PDF	R Script	fastLiquidAssociation Vignette
PDF		Reference Manual

Details

biocViews	CellBiology, GeneExpression, Genetics, Pathways, Software
Version	1.20.0
In Bioconductor since	BioC 2.14 (R-3.1) (5.5 years)
License	GPL-2
Depends	methods, LiquidAssociation, parallel, doParallel, stats, Hmisc, utils
Imports	WGCNA, impute, preprocessCore
LinkingTo
Suggests	GOstats, yeastCC, org.Sc.sgd.db
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	fastLiquidAssociation_1.20.0.tar.gz
Windows Binary	fastLiquidAssociation_1.20.0.zip
Mac OS X 10.11 (El Capitan)	fastLiquidAssociation_1.20.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/fastLiquidAssociation
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/fastLiquidAssociation
Package Short Url	https://bioconductor.org/packages/fastLiquidAssociation/
Package Downloads Report	Download Stats