drawProteins

DOI: 10.18129/B9.bioc.drawProteins    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see drawProteins.

Package to Draw Protein Schematics from Uniprot API output

Bioconductor version: 3.9

This package draws protein schematics from Uniprot API output. From the JSON returned by the GET command, it creates a dataframe from the Uniprot Features API. This dataframe can then be used by geoms based on ggplot2 and base R to draw protein schematics.

Author: Paul Brennan [aut, cre]

Maintainer: Paul Brennan <brennanpincardiff at gmail.com>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("drawProteins")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("drawProteins")

 

HTML	R Script	Using drawProteins
HTML	R Script	Using extract_transcripts in drawProteins
PDF		Reference Manual
Text		NEWS
Text		LICENSE

Details

biocViews	FunctionalPrediction, Proteomics, Software, Visualization
Version	1.4.0
In Bioconductor since	BioC 3.7 (R-3.5) (1.5 years)
License	MIT + file LICENSE
Depends	R (>= 3.4)
Imports	ggplot2, httr, dplyr, readr, stringr, tidyr
LinkingTo
Suggests	covr, testthat, knitr, rmarkdown, BiocStyle
SystemRequirements
Enhances
URL	https://github.com/brennanpincardiff/drawProteins
BugReports	https://github.com/brennanpincardiff/drawProteins/issues/new
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	drawProteins_1.4.0.tar.gz
Windows Binary	drawProteins_1.4.0.zip
Mac OS X 10.11 (El Capitan)	drawProteins_1.4.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/drawProteins
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/drawProteins
Package Short Url	https://bioconductor.org/packages/drawProteins/
Package Downloads Report	Download Stats