clusterStab

DOI: 10.18129/B9.bioc.clusterStab    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see clusterStab.

Compute cluster stability scores for microarray data

Bioconductor version: 3.9

This package can be used to estimate the number of clusters in a set of microarray data, as well as test the stability of these clusters.

Author: James W. MacDonald, Debashis Ghosh, Mark Smolkin

Maintainer: James W. MacDonald <jmacdon at u.washington.edu>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("clusterStab")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("clusterStab")

 

PDF	R Script	clusterStab Overview
PDF		Reference Manual

Details

biocViews	Clustering, Software
Version	1.56.0
In Bioconductor since	BioC 1.7 (R-2.2) (14 years)
License	Artistic-2.0
Depends	Biobase(>= 1.4.22), R (>= 1.9.0), methods
Imports
LinkingTo
Suggests	fibroEset, genefilter
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	clusterStab_1.56.0.tar.gz
Windows Binary	clusterStab_1.56.0.zip
Mac OS X 10.11 (El Capitan)	clusterStab_1.56.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/clusterStab
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/clusterStab
Package Short Url	https://bioconductor.org/packages/clusterStab/
Package Downloads Report	Download Stats