affylmGUI

DOI: 10.18129/B9.bioc.affylmGUI    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see affylmGUI.

GUI for limma Package with Affymetrix Microarrays

Bioconductor version: 3.9

A Graphical User Interface (GUI) for analysis of Affymetrix microarray gene expression data using the affy and limma packages.

Author: James Wettenhall [cre,aut], Ken Simpson [aut], Gordon Smyth [aut], Keith Satterley [ctb]

Maintainer: Gordon Smyth <smyth at wehi.edu.au>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("affylmGUI")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("affylmGUI")

 

HTML		about.html
PDF	R Script	affylmGUI Vignette
HTML		CustMenu.html
PDF		Extracting affy and limma objects from affylmGUI files
HTML		index.html
HTML		windowsFocus.html
PDF		Reference Manual

Details

biocViews	BatchEffect, Bayesian, DataImport, DifferentialExpression, GUI, GeneExpression, Microarray, MultipleComparison, Normalization, OneChannel, Preprocessing, ProprietaryPlatforms, QualityControl, Regression, Software, TimeCourse, Transcription, mRNAMicroarray
Version	1.58.0
In Bioconductor since	BioC 1.6 (R-2.1) or earlier (> 14.5 years)
License	GPL (>=2)
Depends
Imports	grDevices, graphics, stats, utils, tcltk, tkrplot, limma, affy, affyio, affyPLM, gcrma, BiocGenerics, BiocManager, R2HTML, xtable
LinkingTo
Suggests
SystemRequirements
Enhances
URL	http://bioinf.wehi.edu.au/affylmGUI/
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	affylmGUI_1.58.0.tar.gz
Windows Binary	affylmGUI_1.58.0.zip
Mac OS X 10.11 (El Capitan)	affylmGUI_1.58.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/affylmGUI
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/affylmGUI
Package Short Url	https://bioconductor.org/packages/affylmGUI/
Package Downloads Report	Download Stats