affyContam

DOI: 10.18129/B9.bioc.affyContam    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see affyContam.

structured corruption of affymetrix cel file data

Bioconductor version: 3.9

structured corruption of cel file data to demonstrate QA effectiveness

Author: V. Carey

Maintainer: V. Carey <stvjc at channing.harvard.edu>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("affyContam")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("affyContam")

 

PDF	R Script	affy contamination tools
PDF		Reference Manual

Details

biocViews	Infrastructure, Software
Version	1.42.0
In Bioconductor since	BioC 2.3 (R-2.8) (11 years)
License	Artistic-2.0
Depends	R (>= 2.7.0), tools, methods, utils, Biobase, affy, affydata
Imports
LinkingTo
Suggests	hgu95av2cdf
SystemRequirements
Enhances
URL
Depends On Me
Imports Me	arrayMvout
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	affyContam_1.42.0.tar.gz
Windows Binary	affyContam_1.42.0.zip
Mac OS X 10.11 (El Capitan)	affyContam_1.42.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/affyContam
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/affyContam
Package Short Url	https://bioconductor.org/packages/affyContam/
Package Downloads Report	Download Stats