TPP

DOI: 10.18129/B9.bioc.TPP    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see TPP.

Analyze thermal proteome profiling (TPP) experiments

Bioconductor version: 3.9

Analyze thermal proteome profiling (TPP) experiments with varying temperatures (TR) or compound concentrations (CCR).

Author: Dorothee Childs, Nils Kurzawa, Holger Franken, Carola Doce, Mikhail Savitski and Wolfgang Huber

Maintainer: Dorothee Childs <dorothee.childs at embl.de>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("TPP")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("TPP")

 

PDF	R Script	TPP_introduction_1D
PDF	R Script	TPP_introduction_2D
PDF	R Script	TPP_introduction_NPARC
PDF		Reference Manual
Text		NEWS

Details

biocViews	ImmunoOncology, MassSpectrometry, Proteomics, Software
Version	3.12.0
In Bioconductor since	BioC 3.1 (R-3.2) (4.5 years)
License	Artistic-2.0
Depends	R (>= 3.4), Biobase, dplyr, magrittr, tidyr
Imports	biobroom, broom, data.table, doParallel, foreach, futile.logger, ggplot2, grDevices, gridExtra, grid, knitr, limma, MASS, mefa, nls2, openxlsx (>= 2.4.0), parallel, plyr, purrr, RColorBrewer, RCurl, reshape2, rmarkdown, sme, splines, stats, stringr, utils, VennDiagram, VGAM
LinkingTo
Suggests	BiocStyle, testthat
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	TPP_3.12.0.tar.gz
Windows Binary	TPP_3.12.0.zip
Mac OS X 10.11 (El Capitan)	TPP_3.12.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/TPP
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/TPP
Package Short Url	https://bioconductor.org/packages/TPP/
Package Downloads Report	Download Stats