SMAD

DOI: 10.18129/B9.bioc.SMAD    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see SMAD.

Statistical Modelling of AP-MS Data (SMAD)

Bioconductor version: 3.9

Assigning probability scores to prey proteins captured in affinity purification mass spectrometry (AP-MS) expriments to infer protein-protein interactions. The output would facilitate non-specific background removal as contaminants are commonly found in AP-MS data.

Author: Qingzhou Zhang [aut, cre]

Maintainer: Qingzhou Zhang <zqzneptune at hotmail.com>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("SMAD")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("SMAD")

 

HTML	R Script	SMAD Quick Start
PDF		Reference Manual
Text		NEWS
Text		LICENSE

Details

biocViews	MassSpectrometry, Proteomics, Software
Version	1.0.1
In Bioconductor since	BioC 3.9 (R-3.6) (< 6 months)
License	MIT + file LICENSE
Depends	R (>= 3.6.0)
Imports	magrittr (>= 1.5), matrixStats, dplyr, stats, tidyr, utils, Rcpp (>= 1.0.0)
LinkingTo	Rcpp
Suggests	knitr, rmarkdown, testthat, BiocStyle
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	SMAD_1.0.1.tar.gz
Windows Binary	SMAD_1.0.1.zip
Mac OS X 10.11 (El Capitan)	SMAD_1.0.1.tgz
Source Repository	git clone https://git.bioconductor.org/packages/SMAD
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/SMAD
Package Short Url	https://bioconductor.org/packages/SMAD/
Package Downloads Report	Download Stats