PowerExplorer

DOI: 10.18129/B9.bioc.PowerExplorer    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see PowerExplorer.

Power Estimation Tool for RNA-Seq and proteomics data

Bioconductor version: 3.9

Estimate and predict power among groups and multiple sample sizes with simulated data, the simulations are operated based on distribution parameters estimated from the provided input dataset.

Author: Xu Qiao [aut, cre], Laura Elo [cph]

Maintainer: Xu Qiao <xu.qiao at utu.fi>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("PowerExplorer")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("PowerExplorer")

 

PDF	R Script	PowerExplorer Manual
PDF		Reference Manual
Text		NEWS

Details

biocViews	ChIPSeq, Coverage, DifferentialExpression, ImmunoOncology, MultipleComparison, Proteomics, RNASeq, Sequencing, Software
Version	1.4.0
In Bioconductor since	BioC 3.7 (R-3.5) (1.5 years)
License	Artistic-2.0
Depends	R (>= 3.5.0), SummarizedExperiment
Imports	DESeq2, ROTS, vsn, stats, utils, methods, gridExtra, MASS, data.table, ggplot2, Biobase, S4Vectors, BiocParallel
LinkingTo
Suggests	knitr, rmarkdown
SystemRequirements
Enhances
URL	https://gitlab.utu.fi/CompBioMedNGSTools/PowerExplorer
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	PowerExplorer_1.4.0.tar.gz
Windows Binary	PowerExplorer_1.4.0.zip
Mac OS X 10.11 (El Capitan)	PowerExplorer_1.4.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/PowerExplorer
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/PowerExplorer
Package Short Url	https://bioconductor.org/packages/PowerExplorer/
Package Downloads Report	Download Stats