DNAshapeR

DOI: 10.18129/B9.bioc.DNAshapeR    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see DNAshapeR.

High-throughput prediction of DNA shape features

Bioconductor version: 3.9

DNAhapeR is an R/BioConductor package for ultra-fast, high-throughput predictions of DNA shape features. The package allows to predict, visualize and encode DNA shape features for statistical learning.

Author: Tsu-Pei Chiu and Federico Comoglio

Maintainer: Tsu-Pei Chiu <tsupeich at usc.edu>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("DNAshapeR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("DNAshapeR")

 

HTML	R Script	DNAshapeR
PDF		Reference Manual
Text		NEWS

Details

biocViews	DNA3DStructure, Software, StructuralPrediction
Version	1.12.0
In Bioconductor since	BioC 3.3 (R-3.3) (3.5 years)
License	GPL-2
Depends	R (>= 3.4), GenomicRanges
Imports	Rcpp (>= 0.12.1), Biostrings, fields
LinkingTo	Rcpp
Suggests	AnnotationHub, knitr, rmarkdown, testthat, BSgenome.Scerevisiae.UCSC.sacCer3, BSgenome.Hsapiens.UCSC.hg19, caret
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	DNAshapeR_1.12.0.tar.gz
Windows Binary	DNAshapeR_1.12.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan)	DNAshapeR_1.12.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/DNAshapeR
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/DNAshapeR
Package Short Url	https://bioconductor.org/packages/DNAshapeR/
Package Downloads Report	Download Stats