DBChIP

DOI: 10.18129/B9.bioc.DBChIP    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see DBChIP.

Differential Binding of Transcription Factor with ChIP-seq

Bioconductor version: 3.9

DBChIP detects differentially bound sharp binding sites across multiple conditions, with or without matching control samples.

Author: Kun Liang

Maintainer: Kun Liang <kliang at stat.wisc.edu>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("DBChIP")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("DBChIP")

 

PDF	R Script	DBChIP
PDF		Reference Manual

Details

biocViews	ChIPSeq, Genetics, Sequencing, Software, Transcription
Version	1.28.0
In Bioconductor since	BioC 2.11 (R-2.15) (7 years)
License	GPL (>= 2)
Depends	R (>= 2.15.0), edgeR, DESeq
Imports
LinkingTo
Suggests	ShortRead, BiocGenerics
SystemRequirements
Enhances
URL
Depends On Me
Imports Me	metagene, metagene2
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	DBChIP_1.28.0.tar.gz
Windows Binary	DBChIP_1.28.0.zip
Mac OS X 10.11 (El Capitan)	DBChIP_1.28.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/DBChIP
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/DBChIP
Package Short Url	https://bioconductor.org/packages/DBChIP/
Package Downloads Report	Download Stats