selectProbesFromTilingFeatureSet {waveTiling}R Documentation

select probes from WaveTilingFeatureSet object

Description

Extract the probe indices from a WaveTilingFeatureSet object that map to a region between two specified genomic positions

Usage

selectProbesFromTilingFeatureSet(object, chromosome, strand=c("forward","reverse"), minPos, maxPos)

Arguments

object

object of class WaveTilingFeatureSet

chromosome

chromosome

strand

strand

minPos

minimum genomic position

maxPos

maximum genomic position

Value

vector of integers indicating the probe indices

Author(s)

Kristof De Beuf <kristof.debeuf@ugent.be>

Examples

  ## Not run: 
    data(leafdevBQ)
    tt <- selectProbesFromTilingFeatureSet(leafdevBQ,chromosome=1,strand="forward",minPos=22000,maxPos=26000)
    length(tt)
    head(tt)
  
## End(Not run)

[Package waveTiling version 1.26.0 Index]